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Chemical and Structural Biology

The School of Chemistry and Bioscience has a large range of experience in the fields of Chemical and Structural Biology. The researchers’ interests range from synthetic inorganic and organic chemistry to biomaterials, biological synthesis and biophysical applications, particularly their importance as therapeutic agents in neurodegenerative diseases. The research being conducted lies in either synthetic experimental chemistry or computational analysis, and our advanced techniques are giving new insight into biophysical pathways and reactions that inform our chemical understanding of the natural world.

Molecular dynamics simulations of triacylglycerol lipid molecules adsorbed at the aqueous graphene interface. The hydrophobic lipid tails align with each other. The oxygen, carbon and hydrogen atoms of the lipids are coloured red, cyan and white, respectively, while the graphene surface is coloured grey. Water molecules are shown as transparent

Molecular dynamics simulations of triacylglycerol lipid molecules adsorbed at the aqueous graphene interface.

Organic synthesis

The organic chemistry team uses a wide range of synthetic methods for organic synthesis, as well as developing in-house novel reaction methodology using mass spectrometry. The compounds of interest have applications not just in medicinal chemistry, but also in providing synthetic support for archaeological projects. We have the expertise of tackling complex asymmetric multi-step target synthesis, and modern analytical equipment to support our endeavours.

Within this area we also have expertise in solid-phase peptide synthesis using natural and non-natural amino acids. In collaboration with experimentalists, and supported by computational studies, we are designing peptides to be more effective agonists or antagonists in the endocrine and nervous system. Peptides are also synthesised containing post-translational modifications in order to study aging and disease mechanisms.

Another key area of research in the organic section is the development of synthetic supramolecular systems capable of demonstrating responsive behaviour. A wide range of synthetic organic motifs are employed to create complex systems that are able to exhibit dynamic behaviour in order to carry out biomimetic functions, for example the development of a new generation of antibiotics.

 

A student using the Mass Spectrometer

Biological chemistry

An exciting theme within this section sits at the interface of chemistry, biology and physics, and uses both experimental and computational biophysical approaches to study the mechanical properties of tissues and cells and develop our understanding of the molecular basis of disease.

Staff image of Prof Anne Graham

Biological chemistry

An exciting theme within this section sits at the interface of chemistry, biology and physics, and uses both experimental and computational biophysical approaches to study the mechanical properties of tissues and cells and develop our understanding of the molecular basis of disease.

Biological synthesis

Enzyme catalysis within the context of natural products biosynthesis is an area of interest to our team of scientists. The redesign or de novo design of biomolecules is a key element of this research. From a synthetic biology perspective, it is important to thoroughly understand the synthesis of complex natural molecules from simpler and smaller units. This is in turn essential for the production of compounds of therapeutic or economic interest, which is another area of interest to our team, too

Tandem catalysis for stereoselective synthesis of shubstituted heterocycles.

Tandem catalysis for steroselective synthesis of substituted heterocycles.

Biophysics

Computational methods are used to study a range of biomolecules and to design and develop new small molecules and peptide drugs. Current research projects within the School are using computational approaches towards understanding amyloid diseases (e.g. Alzheimer's disease), disease-related post-translational modifications, anti-microbial drug development and the tuning of agonist and antagonist properties (please visit the webpage of Dr Clare-Louise Towse for more information). Specialist analytical techniques, such as Atomic Force Microscopy (AFM), are also being used to examine nano-structures and investigate the structure of skin and cancer cells as well as determining properties of drug crystals.

Thermotoga maritime is a bacterium found in hot springs and hydrothermal vents. This is the structure of an aminotransferase protein (Histidinol-phosphate aminotransferase (HisC) from Thermotoga maritima (apo-form)) extracted from the bacteria

Multi-domain protein model to examine the surface packing and atomic-level interactions between the domains and in the active site.

Postgraduate research opportunities

We welcome enquiries from talented and committed scientists at all levels. Be that postgaduate (PG) level students interested in either taught MSc programs or research based PhD projects, we are keen to recruit and work alongside the brightest upcoming chemists. At PG level, research projects are very important, and we are keen that students get involved with designing their projects. If you have a research question or project in mind, and would like to discuss it with one of our PIs' please don't hesitate to contact us.

Summer undergraduate projects

Members of these groups have a strong history in hosting undergraduate students in short summer projects, giving them valuable research skills and experience during their studies. If you are interested in carrying out a short 6-10 week summer project, fully funded, there are many bursary schemes available (for example the Royal Society of Chemistry).

Contact our staff well in advance to discuss your project and for assistance with writing the funding application.

Currently available PhD opportunities in the area of Chemical and Structural Biology

Biomimetic water splitting using novel transition metal complexes

Dr Sanjit Nayak, Dr Colin Seaton

Computational Chemistry lab in Analytical Centre

Design of an efficient water splitting catalyst will be aimed in this project to discover environmentfriendly way of hydrogen generation from water. This is one of the most challenging areas of research with its relevance to the potential solution for upcoming fuel crisis. The proposed research will focus on biomimetic design and synthesis of polynuclear mixed valence manganese cluster complexes which will be studied for water splitting catalysis. A large pool of naturally available amino acids and their Schiff-base derivatives will be used as ligands to explore different polynuclear coordination complexes. The synthetic part of this project will mainly focus on synthesis of ligands, and coordination complexes. Characterization will involve the use of different analytical techniques (IR, NMR, UV-Vis), use of gas chromatograph, and X-ray diffractometers (single crystal and powder Xray diffraction).

The student will get high quality training in all these areas, and will be involved in developing new materials for biomimetic water splitting catalysis.

Entry requirements

Minimum 2:1 BSc (Hons.), MChem or MSc in Chemistry, or an equivalent degree; knowledge of crystallisation and computational chemistry would be an advantage.

Funding

Applicants will need to have their own funding or external sponsorship. A bench fee may be payable in addition to the tuition fees.

Contact

Email
[email protected]; [email protected]
Computational Chemistry lab in Analytical Centre

Dr Sanjit Nayak, Dr Colin Seaton

Strategic synthesis of magnetically interesting high nuclearity complexes of 3d-4f metal ions

Dr Sanjit Nayak, Dr Colin Seaton

Chemistry - Lab Session 2016

Molecule-based magnets are highly interesting with their potential applications in high-density data storage devices and quantum computing.

This project will focus on strategic synthesis and magnetic studies of high nuclearity paramagnetic clusters and networks. Various Schiff-base ligands will be synthesized with additional hydroxyl groups to bridge between different transition metals and lanthanoids. First-row transition metals will be used in combination with different lanthanoids to achieve high ground state spin and magnetic anisotropy. Cluster complexes will be particularly studied for single-molecule magnetism and the coordination polymers will be studied for their magnetocaloric effects. Computational methods will be developed to predict the properties and structures of the magnetically active polynuclear complexes to direct and explain the experimental studies.

Entry requirements

Minimum 2:1 BSc (Hons.), MChem or MSc in Chemistry, or an equivalent degree; knowledge of crystallisation and computational chemistry would be an advantage.

Funding

Applicants will need to have their own funding or external sponsorship. A bench fee may be payable in addition to the tuition fees.

Contact

Email
[email protected]; [email protected]
Chemistry - Lab Session 2016

Dr Sanjit Nayak, Dr Colin Seaton

Researchers within Chemical and Structural Biology

Dr William Martin

Dr William Martin

Associate Professor in Chemistry

Professor Richard Bowen

Professor Richard Bowen

Professor of Organic Chemistry

Dr Clare-Louise Peyton

Associate Professor in Biophysical Chemistry

Clare Towse

Dr. Peyton joined the University of Bradford in Sept 2016 as a Lecturer in Biophysical Chemistry within the Department of Chemistry and Biosciences. Her background has spanned formulation and analytical chemistry in the pharmaceutical and FMCG industries, NMR method development, protein and peptide synthesis, and computational biophysics. Her main focus of research is post-translational modifications that trigger deleterious conformations in peptides and proteins and the use of novel and non-natural amino acids in peptide drug design.

Contact

Email
[email protected]
Phone
01274 232355
Clare Towse

Associate Professor in Biophysical Chemistry

Dr Zak Hughes

Assistant Professor in Theoretical and Computational Chemistry

Dr Zak Hughes

I predict the structure and interactions of molecular systems using computational methods. Computational chemistry is able to complement experimental work by providing information at the molecular level, helping elucidate behaviour and providing evidence for or against hypotheses.

My research focuses on using simulations to help us understand molecules, especially biomolecules interacting with non-biological materials. For example, the potential environmental effects of nanomaterials such as graphene can be investigated by modelling their interaction with organic molecules found in water

Contact

Email
[email protected]
Dr Zak Hughes

Assistant Professor in Theoretical and Computational Chemistry